Software written or maintained by BBOP.
Current software
| AmiGO |
AmiGO is the official tool for searching and browsing the Gene Ontology database. |
| Apollo |
Apollo is a genomic annotation viewer and editor. It was originally developed as a collaboration between the Berkeley Drosophila Genome Project (part of the FlyBase consortium) and The Sanger Institute in Cambridge, UK. |
| Chado |
Chado is a relational database schema that underlies many GMOD installations. |
| GOOSE |
Allows nearly arbitrary SQL to be executed over the BBOP or EBI mirror of the GO database. It includes query templates, highlighted output, and downloads. |
| OBO-Edit |
OBO-Edit is an open source ontology editor written in Java. This project is supported by the Gene Ontology Consortium. |
| Obolib obo2owl converter |
The obolib obo2owl converter implements the official oboformat 1.4 obo to owl specification. It converts all of obo to owl, and a subset of owl back to obo. |
| Oort |
The OBO Ontology Release Tool (Oort) is an application to help manage ontologies and manage the ontology release process |
| OWLSim |
The OWLSim package provides the ability to do a number of standard semantic similarity methods and includes novel methods for combining these with dynamic selection of anonymous grouping classes. |
| PAINT |
Phylogenetic Annotation and INference Tool (PAINT) is a Java software application for supporting inference of ancestral as well as present-day characters (represented by ontology terms) in the context of a phylogenetic tree. |
| Phenote |
Phenote is both a complete piece of software and a software toolkit designed to facilitate the annotation of biological phenotypes using ontologies. |
| TermGenie |
TermGenie is a web application for ontology content generation. It generates new terms according to pre-defined templates, and uses OWL reasoners to place the term in the correct place in the ontology |